Merge Logistic Regression and Solo PPV Statistics — merge_logreg

This function merges logistic regression model statistics with solo PPV statistics and creates a combined plot.

Usage

merge_logreg_soloppv(model, solo_stats, title = NULL)

Arguments

model: A data frame containing logistic regression model statistics.
solo_stats: A data frame containing solo PPV statistics.
title: An optional title for the plot.

Value

A list containing the combined data frame and the plot.

Examples

if (FALSE) { # \dontrun{
soloPPV_cipro <- solo_ppv_analysis(ecoli_geno, ecoli_ast, 
                          antibiotic="Ciprofloxacin", 
                          drug_class_list=c("Quinolones"), 
                          sir_col="pheno")
logistic_cipro <- amr_logistic(ecoli_geno, ecoli_ast, 
                          "Ciprofloxacin", c("Quinolones"), maf=5)
allstatsR <- merge_logreg_soloppv(logistic_cipro$modelR, 
                    soloPPV_cipro$solo_stats %>% filter(category=="R"), 
                    title="Quinolone markers vs Cip R")
} # }