E. coli NCBI AST example data — ecoli_ast_raw • AMRgen

A subset of E. coli phenotype data from the NCBI AST browser

Usage

ecoli_ast_raw

Format

`ecoli_ast_raw`

A data frame with 10 rows and 17 columns representing unprocessed data from NCBI AST Browser:

#BioSample: sample identifier
Scientific name: species identifier
Antibiotic: antibiotic name
Testing standard: interpretation standard (EUCAST or CLSI)
Measurement sign: measurement sign (>, <, =, etc) relating to MIC measurement
MIC (mg/L): minimum inhibitory concentration
Disk diffusion (mm): disk diffusion zone
Resistance phenotype: resistance call (SIR) as submitted

Source

https://www.ncbi.nlm.nih.gov/pathogens/ast