This function compares two sets of estimates by creating a plot that overlays the estimates and confidence intervals for both sets. It can also display the estimates in two separate plots.
Usage
compare_estimates(
tbl1,
tbl2,
title1 = NULL,
title2 = NULL,
title = NULL,
sig = 0.05,
colors = c("maroon", "blue4"),
x_title = "Coefficient (95% CI)",
y_title = "Variant",
axis_label_size = 9,
single_plot = TRUE,
pd = position_dodge(width = 0.8),
marker_order = NULL
)Arguments
- tbl1
A tibble containing the first set of summary statistics (e.g., coefficients, p-values, CI) for each variant. Expected columns are:
marker: The name of the marker (e.g., variable name).pval: The p-value for each marker.ci.lower: The lower bound of the confidence interval.ci.upper: The upper bound of the confidence interval.est: The estimated coefficient.
- tbl2
A tibble containing the second set of summary statistics for each variant (same format as tbl1).
- title1
Title for tbl1 data. If single_plot, this will be the legend label for tbl1 data; otherwise it will be the title for the tbl1 plot.
- title2
Title for tbl2 data. If single_plot, this will be the legend label for tbl2 data; otherwise it will be the title for the tbl2 plot.
- title
(optional) The main title of the combined plot, if single_plot is TRUE.
- sig
(optional) For individual plots, the p-value threshold for data points to highlight as significant. Defaults to 0.05.
- colors
(optional) For combined plot, a vector of two colors to represent the two input datasets.
- x_title
(optional) The title for the x-axis. Defaults to "Coefficient (95% CI)".
- y_title
(optional) The title for the y-axis. Defaults to "Variant".
- axis_label_size
(optional) The font size of the axis labels. Defaults to 9.
- single_plot
A boolean indicating whether to make a single combined plot (TRUE), or plot each dataset side-by-side (FALSE).
- pd
(optional) Position dodge, i.e. spacing for the 2 estimates to be positioned above/below the line. Default 'position_dodge(width = 0.8)'
- marker_order
(optional) Vector indicating the order of the markers to be plotted on the y-axis.